Code

Below is some code that is available on GitHub that I have developed, please email me if you have questions or open GitHub issues if there are bugs!

Phase field models using JAX.

February 20, 2025

This code is an implementation of Cahn-Hilliard and Allen-Cahn using JAX for grid-based phase field model simulations. The free energy functionals implemented in this package are related to self-assembly principles (see GitHub here for more direct references).

Citation: Vetturini, A. J. (2026). Phase Field Models using JAX (v1.0.0). [Software]. Zenodo. https://doi.org/10.5281/zenodo.18713642

mango: A shape annealing framework for DNA origami nanostructures.

October 17, 2024

This project is found on GitHub here and is in support of the Generative design-enabled exploration of wireframe DNA origami nanostructures publication. If used, please cite:

Citation: Vetturini, A. J., Cagan, J., & Taylor, R. E. (2025). Generative Design-Enabled Exploration of Wireframe DNA Origami Nanostructures. Nucleic Acids Research, 53(2), gkae1268. https://doi.org/10.1093/nar/gkae1268